Published February 15, 2023 | Version v1
Publication Metadata-only

Systematics of the avian family Alaudidae using multilocus and genomic data

Creators

  • 1. Uppsala University
  • 2. Golestan University
  • 3. University of California, Santa Cruz
  • 4. Swedish Museum of Natural History
  • 5. University of Limpopo
  • 6. Troy University
  • 7. University of Groningen
  • 8. University of Gothenburg
  • 9. BirdLife International
  • 10. Natural History Museum

Description

SNP datasets (gzipped VCF files) and tree output (newick-formatted trees in .trees files) associated with the publication Systematics of the avian family Alaudidae using multilocus and genomic data by Alström et al. (2023). In the VCF files, samples have intermediary sequence names. Below is a key (sorted per name in VCF file) to taxon and ID. Further information can be found in Dataset SM1 in the original publication. VCF_name Taxon ID A_hamertoni_hamertoni_1982_3_71 Alaemon hamertoni hamertoni NHMUK 1982.3.71 A_hamertoni_tertia_1982_3_12 Alaemon hamertoni tertia NHMUK 1982.3.12 A_phoenicura_1949_25_4559 Ammomanes phoenicura NHMUK 1949.25.4559 Ala_alaudipes Alaemon alaudipes alaudipes DZUG U5653 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheleensis seebohmi DZUG U5316 AmmocincU4892_S121 Ammomanes cinctura DZUG U4892 AmmodesU5745_S28 Ammomanes deserti DZUG U5745 AmmodesU5748_S106 Galerida cristata magna DZUG U5748 C_duponti_margaritae_1952_51_107 Chersophilus duponti margaritae NHMUK 1952.51.107 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 CalbarlU5662_S32 Calendulauda erythroclamys patae DZUG U5662 CalsabotaU2344_S33 Calendulauda sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 ErealpeU4610_S144 Eremophila alpestris brandti DZUG U4610 Eremalauda_dunni Eremalauda eremodites DZUG U4578 Eremopterix_hova_FMNH449163 Eremopterix hova FMNH 449163 G_deva_1949_whi_1_8153 Galerida deva NHMUK 1949.whi.1.8153 G_malabarica_1949_whi_1_7738 Galerida malabarica NHMUK 1949.whi.1.7738 HetarchU2811_S34 Heteromirafra archeri ("sidamoensis") DZUG U2811 Heteromirafra_ruddi Heteromirafra ruddi DZUG U5661 Lullula_arborea_U544 Lullula arborea UWBM 64680 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana africana NHMUK 1927.5.26.5 M_africana_athi_1951_13_2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi_1968_48_2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_albicauda_1916_12_1_840 Mirafra albicauda NHMUK 1916.12.1.840 M_ashi_1982_3_4 Corypha [Mirafra] ashi NHMUK 1982.3.4 M_collaris_BMNH_1923.8.7.2633 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2633 M_collaris_BMNH_1923.8.7.2634 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2634 M_cordofanica_1932_8_6_261 Mirafra cordofanica NHMUK 1932.8.6.261 M_cordofanica_1932_8_6_262 Mirafra cordofanica NHMUK 1932.8.6.262 M_gilletti_1982_3_10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti_1982_3_9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 M_hypermetra_BMNH_1912.12.23.317 Corypha [Mirafra] hypermetra hypermetra NHMUK 1912.12.23.317 M_rufa_lynesi_1922_12_8_1553 Calendulauda [Mirafra] rufa rufa NHMUK 1922.12.8.1553 M_rufa_nigriticola_1932_8_6_253 Calendulauda [Mirafra] rufa nigriticola NHMUK 1932.8.6.253 M_somalica_somalica_1919_10_6_27 Corypha [Mirafra] somalica somalica NHMUK 1919.10.6.27 MelcalaU0583_S124 Melanocorypha calandra psammochroa DZUG U0583 MelyeltU0580_S35 Melanocorypha yeltoniensis DZUG U0580 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotype) Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 Mirafra_rufocinnamomea_U5657 Amirafra [Mirafra] rufocinnamomea fischeri FMNH 484672 (= DZUG U5657) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 MirfascU5758_S60 Corypha [Mirafra] fasciolata DZUG U5758 Panurus Panurus biarmicus 1ET92164|SAMN13107499 Ramphocoris Ramphocoris clotbey CEFE Rhcl1 (= DZUG U5651) Spizocorys_fringillaris_U5659 Spizocorys fringillaris DZUG U5659 Spizocorys_obbiensis_1908_5_28_104 Spizocorys obbiensis NHMUK 1908.5.28.104 For convenience, the same data sorted per taxon: VCF_name Taxon ID Ala_alaudipes Alaemon alaudipes alaudipes DZUG U5653 A_hamertoni_hamertoni_1982_3_71 Alaemon hamertoni hamertoni NHMUK 1982.3.71 A_hamertoni_tertia_1982_3_12 Alaemon hamertoni tertia NHMUK 1982.3.12 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheleensis seebohmi DZUG U5316 M_collaris_BMNH_1923.8.7.2633 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2633 M_collaris_BMNH_1923.8.7.2634 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2634 Mirafra_rufocinnamomea_U5657 Amirafra [Mirafra] rufocinnamomea fischeri FMNH 484672 (= DZUG U5657) AmmocincU4892_S121 Ammomanes cinctura DZUG U4892 AmmodesU5745_S28 Ammomanes deserti DZUG U5745 A_phoenicura_1949_25_4559 Ammomanes phoenicura NHMUK 1949.25.4559 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 M_gilletti_1982_3_10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti_1982_3_9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 M_rufa_nigriticola_1932_8_6_253 Calendulauda [Mirafra] rufa nigriticola NHMUK 1932.8.6.253 M_rufa_lynesi_1922_12_8_1553 Calendulauda [Mirafra] rufa rufa NHMUK 1922.12.8.1553 CalbarlU5662_S32 Calendulauda erythroclamys patae DZUG U5662 CalsabotaU2344_S33 Calendulauda sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 C_duponti_margaritae_1952_51_107 Chersophilus duponti margaritae NHMUK 1952.51.107 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana africana NHMUK 1927.5.26.5 M_africana_athi_1951_13_2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi_1968_48_2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_ashi_1982_3_4 Corypha [Mirafra] ashi NHMUK 1982.3.4 MirfascU5758_S60 Corypha [Mirafra] fasciolata DZUG U5758 M_hypermetra_BMNH_1912.12.23.317 Corypha [Mirafra] hypermetra hypermetra NHMUK 1912.12.23.317 M_somalica_somalica_1919_10_6_27 Corypha [Mirafra] somalica somalica NHMUK 1919.10.6.27 Eremalauda_dunni Eremalauda eremodites DZUG U4578 ErealpeU4610_S144 Eremophila alpestris brandti DZUG U4610 Eremopterix_hova_FMNH449163 Eremopterix hova FMNH 449163 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 AmmodesU5748_S106 Galerida cristata magna DZUG U5748 G_deva_1949_whi_1_8153 Galerida deva NHMUK 1949.whi.1.8153 G_malabarica_1949_whi_1_7738 Galerida malabarica NHMUK 1949.whi.1.7738 HetarchU2811_S34 Heteromirafra archeri ("sidamoensis") DZUG U2811 Heteromirafra_ruddi Heteromirafra ruddi DZUG U5661 Lullula_arborea_U544 Lullula arborea UWBM 64680 MelcalaU0583_S124 Melanocorypha calandra psammochroa DZUG U0583 MelyeltU0580_S35 Melanocorypha yeltoniensis DZUG U0580 M_albicauda_1916_12_1_840 Mirafra albicauda NHMUK 1916.12.1.840 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotype) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 M_cordofanica_1932_8_6_261 Mirafra cordofanica NHMUK 1932.8.6.261 M_cordofanica_1932_8_6_262 Mirafra cordofanica NHMUK 1932.8.6.262 Panurus Panurus biarmicus 1ET92164|SAMN13107499 Ramphocoris Ramphocoris clotbey CEFE Rhcl1 (= DZUG U5651) Spizocorys_fringillaris_U5659 Spizocorys fringillaris DZUG U5659 Spizocorys_obbiensis_1908_5_28_104 Spizocorys obbiensis NHMUK 1908.5.28.104 Questions can be directed to the corresponding authors.

⚠️ This is an automatic machine translation with an accuracy of 90-95%

Translated Description (Arabic)

مجموعات بيانات SNP (ملفات VCF مضغوطة) وإخراج الشجرة (أشجار بتنسيق newick في ملفات .trees) المرتبطة بنشر Systematics لعائلة الطيور Alaudidae باستخدام multilocus والبيانات الجينية بواسطة Alström et al. (2023). في ملفات VCF، يكون للعينات أسماء تسلسل وسيطة. يوجد أدناه مفتاح (تم فرزه حسب الاسم في ملف VCF) للتصنيف والمعرف. يمكن العثور على مزيد من المعلومات في مجموعة البيانات SM1 في المنشور الأصلي. VCF_NAME Taxon ID A_HAMERTONI_HAMERTONI _1982 _3 _71 Alaemon Hamertoni hamertoni NHMUK 1982.3.71 A_HAMERTONI_TERTIA _1982 _3 _12 Alaemon Hamertoni tertia NHMUK 1982.3.12 A_PHOENICURA _1949 _25 _4559 Ammomanes phoenicura NHMUK 1949.25.4559 Ala_alaudipes Alaudipes Alaudipes DZUG U5653 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheleensis seebohmi DZUG U5316 AmmocincU4892_S121 Ammomanes cinctura DZUG 4892 AmmU 5745_Ammomanes Desert DGU5745 Amm57106_SGalida Magistna DZUna_UG _548_CHMU _1952 107 Chersophilus duponti margaritae NHMUK 1952.51.107 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 CalbarlU5662_S32 Calendulauda erythroclamys patae DZUG U5662 CalsabotaU2344_S33 Calendulauda sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 ErealpeU4610_S144 Eremophila alpestristi DZUG U4610 Eremalauda_dunni Eremalauda eremodites DZUG U4578 Eremopterix_hova_FMN449163 Eremopterova FMHix 449163_G _19493_wh_8153_GalerMUKaHabi.115_1.1153_1_Galabi194938_1 KHarica_1_1_1_728738_HUMarica _728_HUMarhettra_HUMetra_HZUmeterra _728 "R_HZUMERAUZUMERAUMERA" U5661 Lullula_arborea_U544 Lullula arborea UWBM 64680 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana africana NHMUK 1927.5.26.5 M_africana_athi _1951 _13 _2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi _1968 _48 _2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_albicauda _1916 _12 _1 _840 Mirafra albicauda NHMUK 1916.12.1.840 M_ashi NHMUK _1982_3 _4 Corypha [Mirafra] ashi NHMUK 1982.3 M_collaris_MNH19.8.2633 Amirafra [Mirafra Collis NMUKUK] 1923.633_Mollis_Bar_NHar_NH_NE23.234.8347 Amirafrafra Collis [MHUK] NHUMUMUMUK 1951.13 _3 _495 MH _423_623_MUK _19 _623_MUMUMUK _19 _632_19 _19_MKMUMUMUMUM _19 _19632_19 _19632 _19_MUMUMUMUM 6_262 Mirafra cordofanica NHMUK 1932.8.6.262 M_gilletti _1982 _3 _10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti _1982 _3 _9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 M _hypermetra_BMNH_1912.12.23.317 Corypha [Mirafra] hypermetra hypermetra hypermetra NHMUK 1912.12.23.317 M_rufa_lynesi _1922 _12 _8 _1553 Calendulauda [Mirafra] rufa NHMUK 1922.12.8.1553 M_rufa_nigriticola _1932 _8 6 _253 Calendula [Mirafra] nigritola NHMUK 1932.6.353 M_somalica _19 _19 _19 _27 _6 6 [Cirafrapha Somalica _27] Somealica somalica Somalica 1919191919191919190191901901919019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019019021901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901901902 U0580 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotype) Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 Mirafra_rufocinnamomea_U5657 Amirafra [Mirafra] rufocinnamomea fischeri FMNH 484672 (= DZUG U5657) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 MirfascU5758_Sorypha [Mirafrafra] DZU5758 Panurus Panurus Biarmusetus 12192161374997 Ramphor Ramocorbeis Clese (U1ZUZEZ1659)_U1655655659 SpiZ_U5659_U5655659 Spisbiz _190525_UZ_UZ _565825_UZ_UZ _5658_UZ _5658_UZ _5658 _08 _08 _08 _08 _08 _08 _08 _08 _08 _08 _08 _08 _08 _1 _05 _08 _05 _08 _08 _08 _08 _08 _05 _05 _08 _05 _08 _08 _08 _05 _08 _05 _08 _08 _08 _1 _08 _1 _1 _05 _08 _05 _08 _1 _1 _08 _08 _1 _1 _1 _1 _1 _1 _1 _08 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 _1 نفس البيانات مرتبة حسب الصنف: VCF_NAME معرف الصنف Ala_alaudipes Alaemon alaudipes alaudipes DZUG U5653 A_hamertoni_hamertoni _1982 _3 _71 Alaemon Hamertoni hamertoni NHMUK 1982.3.71 A_hamertoni_tertia _1982 _3 _12 Alaemon hamertoni tertia NHMUK 1982.3.12 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheensis seebohmi DZUG U5316 M_collaris_BMNH_1923.8.7.2633 M_collaris_BHN_MNH_BHN_BHN_19.234.2634 Amirafrafra [Mafira Rufira Rufira] Amfira Rufra Rufira Rufra (AMUZUZUK) 485652652657 (AZUMU) Deserti DZUG U5745 A_phoenicura _1949 _25 _4559 Ammomanes phoenicura NHMUK 1949.25.4559 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 M_gilletti _1982 _3 _10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti _1982 _3 _9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 M_rufa_nigriticola _1932 _8 _6 _253 Calendula [Mirafra] nigriticola NHMUKUK 1932.853.2_ rufa lyni _1922 _12 _8 _1553 _1553 [Calendira rufa RufaUFUKU12.5225225225225225223_كاليندريا UHUZUZUK_كاليندريا UZUZUZUL Sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 C_duponti_margaritae _1952 _51 _107 Chersophilus duponti margaritae NHMUK 1952.51.107 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana africana NHMUK 1927.5.26.5 M_africana_athi _1951 _13 _2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi _1968 _48 _2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_as 1982 _3 _4 Corypha [Mirafra] as NHMU 1982.3KK 1982.4 MirfirascU75860 Corypha [Mirafrafra fascata] DUZiolata DGU5758G_UBmetra_Metra_Metra_Metra123.212.3123 Corypha [MirafraK] Hypermetra 19.3312.19_somalica _19191919 _31919191919191919_somira _61919191919_SOMA Somalica NHMUK 1919.10.6.27 Eremalauda_dunni Eremalauda eremodites DZUG U4578 ErealpeU4610_S144 Eremophila alpestris brandti DZUG U4610 Eremopterix_hova_FMNH449163 Eremopterix hova FMNH 449163 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 AmmodesU5748_S106 Galerida cristata magna DZUG U5748 G_deva _1949_WHI _1 _8153 Galerida deva NHMUK 1949.whi.1.8153 G_malabarica _1949_WHI _1 _7738 Galerida malabarica NHUK 1949.whi.7738 HetarchU2811_Seterrafcheri archeri (samiso) DZU28Getera Ufraudra_RUDIRA UUDULUZULULULUA_UBULULUA_UBULULULUA_645806 UMOREA_UMOREA_UMULULUA_UMOREA _6 UMOREA_UMOREA_UMOREAULULUK 645120583 YALA_UMORYSUSUSORIA_YELTORYSOYSOYSUY_YELSUSOYSOYSORYSOYSOY_YEL_YELTORAYSOYSUYSUYSUYSOYSOY_SALAYSOUS_SALA DZUG U0580 M_albicauda _1916 _12 _1 _840 Mirafra albicauda NHMUK 1916.12.1.840 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotype) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 M_cordofanica _1932 _8 _6 _261 Mirafra cordofanica NHMUK 1932.8.6.261 M_cordofanica _1932 _8 _6 _262 Mirafra cordofanica NHMUK 1932.8.6.262 Panurus Panurus panurus biarmususus 1219 SEMUG 1219 | SAMN74139109 Ramocorph Ramisocorphclefy CLEFE RH1 (DZU5651)_UZUZEZEZEZ _5659_UHUZEZEZEZEZ _198 _08_NHOCIZEZEZEZEZ _05 1908.5.28.104 يمكن توجيه الأسئلة إلى المؤلفين المقابلين.

Translated Description (French)

SNP datasets (gzipped VCF files) and tree output (newick-formatted trees in .trees files) associated with the publication Systematics of the avian family Alaudidae using multilocus and genomic data by Alström et al. (2023). Dans les fichiers VCF, les échantillons ont des noms de séquences intermédiaires. Vous trouverez ci-dessous une clé (triée par nom dans le fichier VCF) pour le taxon et l'ID. De plus amples informations peuvent être trouvées dans l'ensemble de données SM1 dans la publication originale. VCF_name Taxon ID A_hamertoni_hamertoni_1982_3_71 Alaemon hamertoni NHMUK 1982.3.71 A_hamertoni_tertia_1982_3_12 Alaemon hamertoni tertia NHMUK 1982.3.12 A_phoenicura_1949_25_4559 Ammomanes phoenicura NHMUK 1949.25.4559 Ala_alaudipes Alaemon alaudipes alaudipes DZUG U5653 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheleensis seebohmi DZUG U5316 AmmocincU4892_S121 Ammomanes cinctura DZUG U4892 AmmodesU5745_S28 Ammomanes deserti DZUG U57modesU5748_S106 Galerida cristata magna DZUG U5748 C_duponti_margaritae_1952_51_107 Chersophilus duponti margaritae NHMUK 1952.51.107 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 CalbarlU5662_S32 Calendulauda erythroclamys patae DZUG U5662 CalsabotaU2344_S33 Calendulauda sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 ErealpeU4610_S144 Eremophila alpestris brandti DZUG U4610 Eremalauda_dunni Eremalauda erodites DZUG U4578 Eremopixter_hova_FMNH449163 Eremopixter hova FMNH 449163_G_deva 1949_whi_1_8153 Galeridaa NHMUwhiK 1949.115_gabica_whi_gabi 1949_1_gabi_1_ga_7738_g_g_g_g_n_g_g_n_g_g_m_g_g_m_g_n_g_g_g_n_g_g_g_g_g_g_g_g_g_g_g_n_g_g_g_g_g_h_g_g_h_g_g_g_g_g_g_g_g_g_g_h_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g_g U5661 Lullula_arborea_U544 Lullula arborea UWBM 64680 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana africana NHMUK 1927.5.26.5 M_africana_athi_1951_13_2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi_1968_48_2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_albicauda_1916_12_1_840 Mirafra albicauda NHMUK 1916.12.1.840 M_ashi_1982_3_4 Corypha [Mirafra] ashi NHMUK 1982.3.4 M_collaris_BMNH_1923.8.7.2633 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2633 M_collaris_BMNH_1923.8.7.2633 Amirafra [Mirafra] collaris NHMUK 1923.8.2633 M_collaris_BMNH_1923.8.2634_M_1932_6_Mirafra NHMUK 193.62_1932_1932_1932_1932_1932_1932_1932_1932_1932_1932_1932 6_262 Mirafra cordofanica NHMUK 1932.8.6.262 M_gilletti_1982_3_10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti_1982_3_9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 M_hypermetra_BMNH_1912.12.23.317 Corypha [Mirafra] hypermetra hypermetra NHMUK 1912.12.23.317 M_rufa_lynesi_1922_12_8_1553 Calendulauda [Mirafra] rufa rufa NHMUK 1922.12.8.1553 M_rufa_nigriticola_1932_8_6_253 Calendulauda [Mirafra] rufa nigriticola NHMUK 1932.8.253 M_somalica_somalica_1919_10_6_27 Corypha [Mirafra] somalica NHMUK 1919.10.67.27 MelcalaU358_124 Melanocandra calphorya psochrochamma DGUK U0583 M_8_1553 U0580 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotype) Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 Mirafra_rufocinnamomea_U5657 Amirafra [Mirafra] rufocinnamomea fischeri FMNH 484672 (= DZUG U5657) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 MirfascU5758_S60 Corypha [Mirafra] fasciolata DZUG U5758 Panurus Panurus biarmicus 1ET92164 | SAMN13107499 Ramphoris Ramphocoris Clotbeyfe Rhécl1 (= DZUG U5651) Spociz_frillingaris_U565 Spocs Spillorys DZUG U5659 Sporys 1908_obsiens_NH_5000_288_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908_1908 Mirafra Mirafra Mirafra Mirafra_1908_1908_les mêmes données triées par taxon : VCF_name Taxon ID Ala_alaudipes Alaemon alaudipes alaudipes DZUG U5653 A_hamertoni_hamertoni_1982_3_71 Alaemon hamertoni hamertoni NHMUK 1982.3.71 A_hamertoni_tertia_1982_3_12 Alaemon hamertoni tertia NHMUK 1982.3.12 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheleensis seebohmi DZUG U5316 M_collaris_BMNH_1923.8.7.2633 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2633 M_collaris_BMNH_1923.8.7.2634 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2634_Mirafra_rufocinnama_U5657 Amirafra [Mirafra] rufocomeinnama fischeri FMNH 484672 (DZUG) U565 Umoco U792 AmincmUH_12481 Sctomanes DZUG DZUG DZUK Amurama 4848 Ammodesmomanes deserti DZUG U5745 A_phoenicura_1949_25_4559 Ammomanes phoenicura NHMUK 1949.25.4559 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 M_gilletti_1982_3_10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti_1982_3_9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 M_rufa_nigriticola_1932_8_6_253 Calendulauda [Mirafra] rufa nigriticola NHMUK 1932.8.6.253 M_rufa_lynesi_1922_12_8_1553 Calendulauda [Mirafra] rufa rufa NHMUK 19.12.1553 CalbarlU5662_322 Calendulauda erroythropata pclame DZUG D66 Cals U2abota U2344 Calendulauda sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 C_duponti_margaritae_1952_51_107 Chersophilus duponti margaritae NHMUK 1952.51.107 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana NHMUK 1927.5.26.5 M_africana_athi_1951_13_2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi_1968_48_2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_ashi_1982_3_4 Corypha [Mirafra] ashi NHMUK 1982.3.4 MirfascU5758_S60 Corypha [Mirafra] fasciolata DZUG5 U758 M_hypermet_MBHN_19.123.217 Corypha [Mirafra] hypermétramet NHMUK 19.123.217_somalica_10alica_1919_6_Corypha [somalica] somalica NHMUK 1919.10.6.27 Eremalauda_dunni Eremalauda eremodites DZUG U4578 ErealpeU4610_S144 Eremophila alpestris brandti DZUG U4610 Eremopterix_hova_FMNH449163 Eremopterix hova FMNH 449163 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 AmmodesU5748_S106 Galerida cristata magna DZUG U5748 G_deva_1949_whi_1_8153 Galerida deva NHMUK 1949.whi.1.8153 G_malabarica_1949_whi_1_7738 Galerida malabarica NHMUK 1949.whi.1.7738 HetarchU2811_S34 Heteromirafra archeri ("sidamoensis") DZUG U1128 Heteromira_ruddi Heteromira ruddi RUDUGU5661_arbulla Lulla U544_arboreula UBUG 646806 Melcala psorycha_S124SUG DZUG U0580 M_albicauda_1916_12_1_840 Mirafra albicauda NHMUK 1916.12.1.840 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotype) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 M_cordofanica_1932_8_6_261 Mirafra cordofanica NHMUK 1932.8.6.261 M_cordofanica_1932_8_6_262 Mirafra cordofanica NHMUK 1932.8.6.262 Panurus Panurus biarmicus 1ET92164 | SAMN13107499 Ramphocoris Ramphocoris clotbey CEFE Rh1 (= DZUG U5651) Spocsorys_frillaris_U5659 Spocsorys frillaris DZUG U5659 Sporys_1908_5_obsorys 1908.5.28.104 Les questions peuvent être adressées aux auteurs correspondants.

Translated Description (Spanish)

SNP datasets (gzipped VCF files) and tree output (newick-formatted trees in .trees files) associated with the publication Systematics of the avian family Alaudidae using multilocus and genomic data by Alström et al. (2023). En los archivos VCF, las muestras tienen nombres de secuencia intermedios. A continuación se muestra una clave (ordenada por nombre en el archivo VCF) para el taxón y el ID. Se puede encontrar más información en el Dataset SM1 en la publicación original. VCF_name Taxon ID A_hamertoni_hamertoni_1982_3_71 Alaemon hamertoni hamertoni NHMUK 1982.3.71 A_hamertoni_tertia_1982_3_12 Alaemon hamertoni tertia NHMUK 1982.3.12 A_phoenicura_1949_25_4559 Ammomanes phoenicura NHMUK 1949.25.4559 Ala_alaudipes Alaemon alaudipes alaudipes DZUG U5653 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheleensis seebohmi DZUG U5316 AmmocincU4892_S121 Ammomanes cinctura DZUG U4892 AmmodesU5745_S28 Ammomanes deserti DZUG U5745 AmmodesU5748_S106 Galidaerata magna DZUG U5748_duponti_margaritae 1952_51_107 Chersophilus duponti margaritae NHMUK 1952.51.107 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 CalbarlU5662_S32 Calendulauda erythroclamys patae DZUG U5662 CalsabotaU2344_S33 Calendulauda sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 ErealpeU4610_S144 Eremophila alpestris brandti DZUG U4610 Eremalauda_dunni Eremalauda eremodites DZUG U4578 Eremopterix_hova_FMNH449163 Eremopterix hova FMNH 449163 G_deva_1949_whi_1_8153 Galerida de NHMUK.whi.1153_malabarica whi_Galabarida_1_7738_NHMUK.NHe_Hefirdi Hefasdiis (Hefraiddiis) "ramofraidi" (Hefraidi) DZUGraidi (DZUGraidi) rafraidi (DZUGraidi) ramoudraid. U5661 Lullula_arborea_U544 Lullula arborea UWBM 64680 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana africana NHMUK 1927.5.26.5 M_africana_athi_1951_13_2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi_1968_48_2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_albicauda_1916_12_1_840 Mirafra albicauda NHMUK 1916.12.1.840 M_ashi_1982_3_4 Corypha [Mirafra] ashi NHMUK 1982.3.4 M_collaris_BMNH_1923.8.7.2633 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2633 M_collaris_BMNH_1923.8.2634 Amirafra [Mirafra] collaris NHMNH_1923.8.7.2634 M_cordofanica_1932_8_261 Mirafra NHMUH_1927.5.26.56.56.5 Corypha [Mirafra] 6_262 Mirafra cordofanica NHMUK 1932.8.6.262 M_gilletti_1982_3_10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti_1982_3_9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 M_hypermetra_BMNH_1912.12.23.317 Corypha [Mirafra] hypermetra hypermetra NHMUK 1912.12.23.317 M_rufa_lynesi_1922_12_8_1553 Calendulauda [Mirafra] rufa rufa NHMUK 1922.12.8.1553 M_rufa_nigriticola_1932_8_6_253 Calendulauda [Mirafra] rufa nigriticola NHMUK 1932.8.6.253 M_somalica_somalica_1919_10_27_Corypha [Mirafra] somalica NHMUK 1919.67 Melcala583124 S U0580 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotipo) Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 Mirafra_rufocinnamomea_U5657 Amirafra [Mirafra] rufocinnamomea fischeri FMNH 484672 (= DZUG U5657) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 MirfascU5758_S60 Corypha [Mirafra] fasciolata DZUG U5758 Panurus Panurus biarmicus 1ET92164 | SAM13107499 Ramphocoris Ramphocoris cloty CEFE Rhcl1 (= DZUG U5651) Spizocorys_frillaris_U5659 los mismos datos ordenados por taxón: VCF_name Taxon ID Ala_alaudipes Alaemon alaudipes alaudipes DZUG U5653 A_hamertoni_hamertoni_1982_3_71 Alaemon hamertoni hamertoni NHMUK 1982.3.71 A_hamertoni_tertia_1982_3_12 Alaemon hamertoni tertia NHMUK 1982.3.12 Alauda_arvensis_KZ Alauda arvensis dulcivox DZUG U0587 Alaudala_seebohmi Alaudala cheleensis seebohmi DZUG U5316 M_collaris_BMNH_1923.8.7.2633 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2633 M_collaris_BMNH_1923.8.7.2634 Amirafra [Mirafra] collaris NHMUK 1923.8.7.2634 Mirafra_rufocinnamomea_U5657 Amirafra [Mirafra] rufocnama fischer FMi 4846H (= DZU5657 Umoc) Ammo48 S921121 Somanmomanes cinctura DZMUK_Ammode_Ammodes92_Ammodes_Amm_1982_1982_3_deserti DZUG U5745 A_phoenicura_1949_25_4559 Ammomanes phoenicura NHMUK 1949.25.4559 Cal_brachydactyla Calandrella brachydactyla rubiginosa DZUG U5655 M_gilletti_1982_3_10 Calendulauda [Mirafra] gilletti arorihensis NHMUK 1982.3.10 M_gilletti_1982_3_9 Calendulauda [Mirafra] gilletti degodiensis NHMUK 1982.3.9 Mirafra_degodiensis Calendulauda [Mirafra] gilletti degodiensis DZUG U2808 M_rufa_nigriticola_1932_8_6_253 Calendulauda [Mirafra] rufa nigriticola NHMUK 1932.8.6.253_rufa_lynesi_1922_12_8_1553 Calendulauda [Mirafra] rufa rufa NHMUK 19.12.122.1553 Calbarl5662_S32 Calendula erythroclata pysamatae DZU56 Cabalsota 2333 sabota suffusca DZUG U2344 CheralboU5652_S52 Chersomanes albofasciata DZUG U5652 C_duponti_margaritae_1952_51_107 Chersophilus duponti margaritae NHMUK 1952.51.107 M_a_africana_BMNH_1927.5.26.5 Corypha [Mirafra] africana NHMUK 1927.5.26.5 M_africana_athi_1951_13_2495 Corypha [Mirafra] africana athi NHMUK 1951.13.2495 M_africana_athi_1968_48_2 Corypha [Mirafra] africana athi NHMUK 1968.48.2 M_ashi_1982_3_4 Corypha [Mirafra] ashi NHMUK 1982.3.4 MirfascU5758_S60 Corypha [Mirafra] fasciolata DZUG U5758 Mhypermetra_BNH1912_3.23.37 Corypha [Mirafra] hypermetraMmetra NHMU12.23.37 M_M_Mafra_C_duponti_C_duponti_C_1919_somorya_somal [Mirafra] somalica NHMUK 1919.10.6.27 Eremalauda_dunni Eremalauda eremodites DZUG U4578 ErealpeU4610_S144 Eremophila alpestris brandti DZUG U4610 Eremopterix_hova_FMNH449163 Eremopterix hova FMNH 449163 E_leucotis_BMNH_1952.25.36 Eremopterix leucotis NHMUK 1952.25.36 AmmodesU5748_S106 Galerida cristata magna DZUG U5748 G_deva_1949_whi_1_8153 Galerida deva NHMUK 1949.whi.1.8153 G_malabarica_1949_whi_1_7738 Galerida malabarica NHMUK 1949.whi.1.7738 HetarchU2811_S34 Heteromirafra archeri ("sidamoensis") DZUG 28 U11 Heteromirafraud_rdi Heteromirra rudra rdi DZUG56 U61 Lullula_arborea_L5 Lullula arb4444 Uborea WB806 DZUG U0580 M_albicauda_1916_12_1_840 Mirafra albicauda NHMUK 1916.12.1.840 Mirafra_alb_ZMB_2000.9488 Mirafra albicauda ZMB 2000.9488 Mirafra_albi_ZMB_49.225 Mirafra albicauda ZMB 49.225 (holotipo) MirchenU5660_S37 Mirafra cheniana DZUG U5660 MirchenU5759_S36 Mirafra cheniana DZUG U5759 M_cordofanica_1932_8_6_261 Mirafra cordofanica NHMUK 1932.8.6.261 M_cordofanica_1932_8_6_262 Mirafra cordofanica NHMUK 1932.8.6.262 Panurus Panurus biarmicus 1ET92164 | SAMN13107499 Ramphocoris Ramphocoris clotbey CEFE Rhcl1 (= DZUG U5651) 1908.5.28.104 Las preguntas pueden dirigirse a los autores correspondientes.

Additional details

Additional titles

Translated title (Arabic)
النظاميات من عائلة الطيور Alaudidae باستخدام multilocus والبيانات الجينية
Translated title (French)
Systématique de la famille aviaire Alaudidae à l'aide de données multilocales et génomiques
Translated title (Spanish)
Sistemática de la familia aviar Alaudidae utilizando datos multilocus y genómicos

Identifiers

Other
https://openalex.org/W4393686853
DOI
10.5281/zenodo.7643431

Is supplement to
https://openalex.org/W2788277189 (Other)
https://openalex.org/W2328139595 (Other)
https://openalex.org/W2130076355 (Other)
https://openalex.org/W2119695867 (Other)
https://openalex.org/W2082860237 (Other)
https://openalex.org/W2061542922 (Other)
https://openalex.org/W2046158694 (Other)
https://openalex.org/W2013243191 (Other)
https://openalex.org/W1993764875 (Other)
https://openalex.org/W1990804418 (Other)

GreSIS Basics Section

Is Global South Knowledge
Yes
Country
Kenya